Supplementary files for the manuscript titled
"Compact Genetic Algorithm-based Feature Selection for Sequence-based Prediction of Dengue-Human Protein Interactions"
Authors: Lopamudra Dey and Anirban Mukhopadhyay
Journal: Submitted to IEEE/ACM Transactions on Computational Biology and Bioinformatics
Supplementary Files - File D1: Excel file containing experimentally validated DENV-human PPIs. Columns include human and dengue protein names, human protein's Entrez gene id, dengue serotype, paper name, author name and PubMed id (XLSX)
- File D2: Parameter Setting values of all feature selection algorithms compared in this study. (DOCX)
- File D3: Excel file containing the feature subset used in this study. (XLSX)
- File D4: Mean, Median, Standard Deviation and corrected t-test of the accuracies of all 4 classifiers using 10-fold cross-validation of 10 iterations on 1:1 positive:negative training dataset using 54 important features.
- File D5: Excel file containing predicted DENV-human PPIs. Columns include predicted human protein's UniProt accession, UniProt name, gene name, protein description, Entrez gene id of predicted human proteins, prediction score and predicted dengue protein. (XLSX)
- File D6: Excel file containing predicted DENV-human PPIs supported by multiple works of literature. Columns include predicted human proteins name, Entrez gene id, dengue protein/serotype/Dengue RNA and paper name. (XLSX)
- File D7: Excel file containing predicted human proteins that interact with other viruses. (XLSX)
- File D8: Excel file containing predicted human proteins' GO terms. (XLSX)
- File D9: The flowchart of the methodology used in this paper. (PNG)
|
 Updating...
Ĉ Anirban Mukhopadhyay, Dec 8, 2020, 4:43 AM
ĉ Anirban Mukhopadhyay, Dec 8, 2020, 4:43 AM
Ĉ Anirban Mukhopadhyay, Dec 8, 2020, 4:43 AM
Ĉ Anirban Mukhopadhyay, Dec 8, 2020, 4:43 AM
Ĉ Anirban Mukhopadhyay, Dec 8, 2020, 4:43 AM
Ĉ Anirban Mukhopadhyay, Dec 8, 2020, 4:43 AM
Ĉ Anirban Mukhopadhyay, Dec 8, 2020, 4:43 AM
Ĉ Anirban Mukhopadhyay, Dec 8, 2020, 4:43 AM
Anirban Mukhopadhyay, Dec 8, 2020, 4:44 AM
|