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Supplementary files for the manuscript titled 

"Compact Genetic Algorithm-based Feature Selection for Sequence-based Prediction of Dengue-Human Protein Interactions"

Authors: Lopamudra Dey and Anirban Mukhopadhyay

Journal: Submitted to IEEE/ACM Transactions on Computational Biology and Bioinformatics


Supplementary Files
  • File D1: Excel file containing experimentally validated DENV-human PPIs. Columns include human and dengue protein names, human protein's Entrez gene id, dengue serotype, paper name, author name and PubMed id (XLSX)

  • File D2: Parameter Setting values of all feature selection algorithms compared in this study. (DOCX)

  • File D3: Excel file containing the feature subset used in this study. (XLSX)

  • File D4: Mean, Median, Standard Deviation and corrected t-test of the accuracies of all 4 classifiers using 10-fold cross-validation of 10 iterations on 1:1 positive:negative training dataset using 54 important features.

  • File D5: Excel file containing predicted DENV-human PPIs. Columns include predicted human protein's UniProt accession, UniProt name, gene name, protein description, Entrez gene id of predicted human proteins, prediction score and predicted dengue protein. (XLSX) 

  • File D6: Excel file containing predicted DENV-human PPIs supported by multiple works of literature. Columns include predicted human proteins name, Entrez gene id, dengue protein/serotype/Dengue RNA and paper name. (XLSX)

  • File D7: Excel file containing predicted human proteins that interact with other viruses. (XLSX)

  • File D8: Excel file containing predicted human proteins' GO terms. (XLSX)

  • File D9The flowchart of the methodology used in this paper. (PNG)

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D1.xlsx
(65k)
Anirban Mukhopadhyay,
Dec 8, 2020, 4:43 AM
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D2.docx
(15k)
Anirban Mukhopadhyay,
Dec 8, 2020, 4:43 AM
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D3.xlsx
(36k)
Anirban Mukhopadhyay,
Dec 8, 2020, 4:43 AM
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D4.xlsx
(11k)
Anirban Mukhopadhyay,
Dec 8, 2020, 4:43 AM
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D5.xlsx
(111k)
Anirban Mukhopadhyay,
Dec 8, 2020, 4:43 AM
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D6.xlsx
(364k)
Anirban Mukhopadhyay,
Dec 8, 2020, 4:43 AM
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D7.xlsx
(12k)
Anirban Mukhopadhyay,
Dec 8, 2020, 4:43 AM
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D8.xlsx
(13k)
Anirban Mukhopadhyay,
Dec 8, 2020, 4:43 AM
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D9.png
(67k)
Anirban Mukhopadhyay,
Dec 8, 2020, 4:44 AM
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